species:   Rhsol
pid:       PID0569
parent:    Rhi-milR-107
paralog:   
locus:     KB317737.1:56848-56919
matures:   ['UAGGCUACUUGGACCACCUGGAG', 'CCAGUCUGUCACGAGUUGCGCUUUG']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317737.1:56848-56919

3 out of bounds
12 alignments
9 proper strand
8 stranded perfect matches

        ********************************************************        
GUUGCGUUCAUAGGCUACUUGGACCACCUGGAGGCUUGCCCAGUCUGUCACGAGUUGCGCUUUGACUCGGCU
((((.((.((.((((.((((((((...((((........))))...))).))))).)).)).)))).)))).
----------UAGGCUACUUGGACCACCUGGAG--------------------------------------- l=23 a=0 c
---------------------------------------CCAGUCUGUCACGAGUUGCGCUUUG-------- l=25 a=0 c*
----------UAGGCUACUUGGACCACCUGGAGGC------------------------------------- l=25 a=4 ma
-------------------------------------GCCCAGUCUGUCACGAGUUGCGCUUUG-------- l=27 a=0 ma*

----------UAGGCUACUUGGACCACCUGGAGG-------------------------------------- l=24 a=1 
----------UAGGCUACUUGGACCAuCUGGAGG-------------------------------------- l=24 a=1 
----------UAGGCUACUUGGACCACCUGGAGGC------------------------------------- l=25 a=4 (ma)
-----------AGGCUACUUGGACCACCUGGAGGC------------------------------------- l=24 a=2 
-------------------UGGACCACCUGGAGGCUUGCC-------------------------------- l=21 a=1 

mb-01011
ax-1001001
ku-01
ss-101010101110
fn-101
